PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0031.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 223aa    MW: 24471.7 Da    PI: 5.0294
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0031.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.23.9e-56371411102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd
  Kaladp0016s0031.2.p  37 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 126
                          89*****998899***************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivpr+e+k
  Kaladp0016s0031.2.p 127 IFDFLVDIVPREEIK 141
                          ***********9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.29E-3429131IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.5E-3751123IPR009072Histone-fold
PfamPF008081.9E-2059122IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDNNNQLQQV GQHPPPPAAG PPPPPFHHQL LQQQQQQLQM FWTYQRQEIE QVNDFKNHQL  60
PLARIKKIMK ADEDVRMISA EAPILFSKAC ELFILELTIR SWLHAEENKR RTLQKNDIAA  120
AITRTDIFDF LVDIVPREEI KEEVGALMGS GVVGGTVPFY YPAMGQPAGM MMGRPVGDPA  180
SGAYLAPPSQ AWQSVWQTPG ADEGAYGSGG GNGGQQQGNV DG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C9e-443813719119HapE
4g92_C9e-443813719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467975.11e-101PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1
SwissprotQ9FMV51e-93NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
SwissprotQ9SMP01e-93NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLI3SBJ91e-102I3SBJ9_LOTJA; Uncharacterized protein
STRINGGLYMA06G17780.11e-97(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-85nuclear factor Y, subunit C4